PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 178aa    MW: 19133.8 Da    PI: 5.0083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-11129165138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++ 
  Vradi11g10460.1 129 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGV 165
                      899*****************************.**985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.047124173IPR017930Myb domain
SuperFamilySSF466892.34E-8126165IPR009057Homeodomain-like
SMARTSM007170.0019128172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-11128166IPR009057Homeodomain-like
PfamPF002499.8E-10129165IPR001005SANT/Myb domain
CDDcd001671.88E-9132166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MISSQQNQNA PTCYPFPSSP SMGMVCADMM GSLSLATVSN ALSSQESFAY GHHGHTSGVG  60
NGRSTSWSFP FMREFLSSNF EDCSEVGAGE TNSNEKTNNN GKFSEESNPN ENLLSGKEVD  120
SGHSKLCARG HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGVEENNS KSAKNDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519753.21e-116transcription factor MYB105-like
TrEMBLA0A1S3VN001e-114A0A1S3VN00_VIGRR; transcription factor MYB105-like
STRINGXP_007157609.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-20myb domain protein 105