PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10600.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 200aa    MW: 22397 Da    PI: 9.8458
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly43.18.2e-1475132156
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfa 56 
                      svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a+++++ +  ydW++kq+  
  Vradi11g10600.1  75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEEsiYDWNQKQVVQ 132
                      79***************************************9865444*******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.6E-1965131IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.2E-1268131IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.2E-1576135IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MFHIVHSLPL KHLSLPFHSF VPPKFIVPLN RNFSFIFPTS LSVRCNHSNI VEPFPPLPQY  60
PSVAELPQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVGTEE  120
SIYDWNQKQV VQDSYVFALQ MYKCVVDISL SGCLGATLGI GWEVMIRVEK EKKGRREVRP  180
NGIDHKGRTV GGRVKQAKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A1e-1566130567Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B1e-1566130567Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C1e-1566130567Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D1e-1566130567Single-stranded DNA-binding protein WHY1, chloroplastic
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-85AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521214.14e-93single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A1S3VT179e-92A0A1S3VT17_VIGRR; single-stranded DNA-binding protein WHY1, chloroplastic
STRINGXP_007157686.16e-66(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.18e-18ssDNA-binding transcriptional regulator