PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 249aa    MW: 28296.9 Da    PI: 5.303
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.81e-17161221161
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      e e++rer++q+NRe+ArrsR RK+ e+eeL +k++ L+ eN++L ++l++l++e+ +  +
  Vradi11g11190.1 161 EDEIRRERKRQSNRESARRSRMRKERECEELHKKMEILKDENSMLTQRLKSLSEECLEICN 221
                      6799****************************************************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-14157217No hitNo description
PfamPF001702.6E-15161218IPR004827Basic-leucine zipper domain
SMARTSM003383.6E-16161225IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.829163215IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10164219No hitNo description
CDDcd147021.88E-15166216No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDETLSSIIC QCQFEWANST VLQSNVLQDP MKLSNKPTVS EDAVLAFSEI VHRTFGEQNL  60
NSIKKCARNL QPKSLIPKES RGDGSKSSIL KNNKDRVLCS EAYGNKGSLH EDLVTANDFP  120
STKKQHCNLV LENASSIQLN QDLETGLDAI GTNTELVKLE EDEIRRERKR QSNRESARRS  180
RMRKERECEE LHKKMEILKD ENSMLTQRLK SLSEECLEIC NENDAIEEEL VNMYGTESIS  240
YLLAMKPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184RRSRMRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-83AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520623.11e-167G-box-binding factor 1 isoform X1
RefseqXP_014520624.11e-167G-box-binding factor 1 isoform X1
TrEMBLA0A1S3VQG01e-166A0A1S3VQG0_VIGRR; G-box-binding factor 1 isoform X1
STRINGGLYMA20G01030.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149401013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-21G-box binding factor 1