PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 455aa    MW: 49416.2 Da    PI: 9.8872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k ++ 
  Vradi11g11530.1 11 EWSREQDKAFENALATHPEDasdRWEKIAADVP-GKTIEEIKQHYE 55
                     7********************************.**********95 PP
2Myb_DNA-binding25.14e-08289327947
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      d l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Vradi11g11530.1 289 DRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 327
                      568899999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.934762IPR017884SANT domain
SMARTSM007171.6E-9860IPR001005SANT/Myb domain
SuperFamilySSF466897.33E-111066IPR009057Homeodomain-like
PfamPF002499.9E-91155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-51155IPR009057Homeodomain-like
CDDcd001674.85E-91158No hitNo description
SMARTSM007172.1E-4280330IPR001005SANT/Myb domain
PROSITE profilePS512935.977285332IPR017884SANT domain
PfamPF002494.0E-6289327IPR001005SANT/Myb domain
CDDcd001671.40E-5289328No hitNo description
Gene3DG3DSA:1.10.10.603.9E-6289326IPR009057Homeodomain-like
SuperFamilySSF466893.14E-10289333IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-11289330IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTVDEVDSSS EWSREQDKAF ENALATHPED ASDRWEKIAA DVPGKTIEEI KQHYELLVED  60
VSQIESGCVP LPSYNSSSEG STSHASDEGA GKKGSGLGNF NNKIGKKWEA YQIFTQYTQT  120
LNQPQRLGED VPRCAGNHPD SNIEGLGDGA GWQAKHMLWI KVSSSVTCKM LRRNVGAIQT  180
GRGLQDLKIM GIQLMIYISH KKAILFELVE CSVGIRVMLK PCRTFLLFNK KQEFWWLNES  240
FGALGGRTTV EKPRRSPTRM PKGMGKRNRC IGLNLTVSMF GTPYVAKPDR LFLLGLDKYG  300
KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR SSIHDITSVN NGDVLAPQGP  360
ITGQTNGAAT NSTSKATKQA TPASTGVGIY AAPTIGQPVG GPLVSAVGTP VNLPSPAHMA  420
YGVRAPVTGA VVPGAPVNVS PVTYPMPHTS APHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-18877776RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520829.11e-113transcription factor SRM1
RefseqXP_022631662.11e-113transcription factor SRM1
RefseqXP_022631663.11e-113transcription factor SRM1
SwissprotQ9FNN62e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A445EZE11e-156A0A445EZE1_GLYSO; Transcription factor SRM1
STRINGXP_007153178.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-55MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]