PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 238aa    MW: 25960.8 Da    PI: 7.6669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004383105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Vradi11g11680.1  83 FSCNYCRRKFFSSQALGGHQNAH 105
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-681111No hitNo description
PROSITE profilePS5015711.30283110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MELHIATSKL DKRSGSSVYA SQDYLDNSSS SCLTKTDPDS GSLSLDLTLK FNHSDEEFKG  60
ESHTNSEVGG ETHPSALAVP RVFSCNYCRR KFFSSQALGG HQNAHKRERT MAKRALRMGI  120
LTERYTSLAS LPLHGSSCRS LGLEAHASIH QGQVQSVRVP EIGVGAKFEK DYFRTPIFVE  180
DDDDGLFWPG SFRKTEGRGG FGVNLRHDAD AFNSSTRFVA TAAPAQTSAT PDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520262.11e-161zinc finger protein 7
RefseqXP_014520263.11e-161zinc finger protein 7
TrEMBLA0A1S3VPE21e-160A0A1S3VPE2_VIGRR; zinc finger protein 7
STRINGXP_007153194.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-35zinc finger protein 4