PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g11830.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 395aa MW: 43637.5 Da PI: 5.4713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g11830.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	43	165	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC................................................................. CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas................................................................ 31 ++ + rE+ RRdr+N+ f+eL l ++ Vradi11g11830.1 43 KVLKADREKLRRDRLNEHFQELGNTLEDSVsrrngngddgvvimmvmvvselavvvpvevmevsvvggngnnneyssndsdstgdknvtvkifm 136 566789********************888*********************************************************** PP ........TTS-STCHHHHHHHHHHHHHH CS HLH 32 ......kapskKlsKaeiLekAveYIksL 54 ++ +K++Ka+iL+++v+ +k+L Vradi11g11830.1 137 lvelnaDPDRPKNDKATILTETVQMLKDL 165 *8888888*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-11	41	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.623	41	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	42	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-8	43	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-4	47	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	143	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	145	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MLLTHFKHFS NQILCEHFYG REFNRERESK GEGEKEDPSA SRKVLKADRE KLRRDRLNEH 60 FQELGNTLED SVSRRNGNGD DGVVIMMVMV VSELAVVVPV EVMEVSVVGG NGNNNEYSSN 120 DSDSTGDKNV TVKIFMLVEL NADPDRPKND KATILTETVQ MLKDLTAEVN RLKTEHKALS 180 EESHELMQEK NELREEKASL KSDIENLNAQ YQQRVRIMFP WTAIDHSVVI SPPYSYPLPI 240 PIPPAPISIH PSLQPFPFFG NQNPGPIPSP CSMYVPYSTP TNNPVDPPSM LYASTSHVSN 300 QRESFSKSSG DRRPSSDAER CSESHDVATE LELKMPGSSS TQQDSTSGGR KGKHSVVRDR 360 TIIGGSAGSA SSRYSSSQGL QDSSNSVGDI PKTD*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MLLTHFKHFS NQILCEHFYG REFNRERESK GEGEKEDPSA SRKVLKADRE KLRRDRLNEH  60
FQELGNTLED SVSRRNGNGD DGVVIMMVMV VSELAVVVPV EVMEVSVVGG NGNNNEYSSN  120
DSDSTGDKNV TVKIFMLVEL NADPDRPKND KATILTETVQ MLKDLTAEVN RLKTEHKALS  180
EESHELMQEK NELREEKASL KSDIENLNAQ YQQRVRIMFP WTAIDHSVVI SPPYSYPLPI  240
PIPPAPISIH PSLQPFPFFG NQNPGPIPSP CSMYVPYSTP TNNPVDPPSM LYASTSHVSN  300
QRESFSKSSG DRRPSSDAER CSESHDVATE LELKMPGSSS TQQDSTSGGR KGKHSVVRDR  360
TIIGGSAGSA SSRYSSSQGL QDSSNSVGDI PKTD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g11830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027915386.1	1e-153	transcription factor bHLH121-like
Swissprot	Q9LT23	4e-57	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A4D6LLZ3	1e-152	A0A4D6LLZ3_VIGUN; Myc-type
STRING	XP_007153217.1	1e-143	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	9e-40	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]