PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 552aa    MW: 58927.2 Da    PI: 5.7132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09367415355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Vradi11g12270.1 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDMSDKKKFE VDRNEDPMGY SSGMHSDWRF GGANLANSSA GLVAMGNSVN ASRGDLIGSS  60
SCSSASMVDS FGASYWDNTT GSRNLGFCDF DVHNNGGSSN TAGIRKDGFG FGRVAQVHHG  120
TLEMAWSPAN SMLQNGPGLF PHSLSQFPTD SGFIERAARF SCFSGGNFTD MVNSYGIAQS  180
TGVYGARDAI AGHGLKSVTE GQSEGGDMNV IEATKDLSPS VEHLASKGSP LKSDKRSEGH  240
ITSQDDGKLS LVRPANESDR AESSDDGGGQ DDSPLLEGAS GEPSIKGLNS KKRKRSGLDA  300
DNGKGNGAPE IPNDAAQDNS DNQQMVGHQP IPATKSSGKN AKLGSQASDP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFNIEGLL AKDILQHRPG PSSGLGFPLD ISMAFPPLHP SQPGLIHQII  480
PNMANSADIL QRNIHQQLAP LNGELKEPNQ LSDVWDDELH NVVQMSFATT APLSNENVDG  540
TVSSSQMKVE L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g12270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521233.10.0transcription factor bHLH49
RefseqXP_014521235.10.0transcription factor bHLH49
RefseqXP_022643137.10.0transcription factor bHLH49
TrEMBLA0A1S3VS680.0A0A1S3VS68_VIGRR; transcription factor bHLH49
STRINGGLYMA01G09400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-103bHLH family protein