PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 248aa    MW: 27566.6 Da    PI: 10.5738
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.7e-32142197156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+
  Vradi11g12960.1 142 KQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 197
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.73E-18139200IPR009057Homeodomain-like
PROSITE profilePS5129413.094139199IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-29139200IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-27142197IPR006447Myb domain, plants
PfamPF002496.4E-7144194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLSRKMGFRE YIEALEEERR KIQVFPKELP LSLELVTQGK TLKKKAIIGY PFVISVQLWN  60
SNPPPTKEDV PRKANVVEVK RNGGAFQPFQ REEKSAIVDG KANNYASAIG KTPSSPPVPA  120
TSSTGPVRID SRKEEKGQTQ RKQRRCWSQE LHKRFLHALQ QLGGADSATP KQIRELMKVD  180
GLTNDEVKSH LQKFRLHTRR SPIIHNNGNS QAAPLFLVGN IFVQPPEYGV VATSTASGGE  240
LTTMSLD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g12960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-148AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520220.11e-137transcription factor HHO2
SwissprotQ9FPE82e-44HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A1S3VPK61e-135A0A1S3VPK6_VIGRR; transcription factor HHO2
STRINGXP_007153350.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-46G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]