PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g13010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 262aa    MW: 30490.3 Da    PI: 11.0623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g13010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1899149256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvA Ir p++   r+r +lg+fgt e+Aa a+++ + kl+ge
  Vradi11g13010.1  99 LYRGVRQRH-WGKWVAVIRLPRN---RTRLWLGTFGTTEDAAMAYDREAFKLRGE 149
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.84E-3198157No hitNo description
SuperFamilySSF541716.54E-2199157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2899157IPR001471AP2/ERF domain
SMARTSM003802.5E-3399162IPR001471AP2/ERF domain
PROSITE profilePS5103220.94399156IPR001471AP2/ERF domain
PRINTSPR003673.9E-10100111IPR001471AP2/ERF domain
PfamPF008472.5E-12100149IPR001471AP2/ERF domain
PRINTSPR003673.9E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQFPHQFGAT NSPFPHPSFQ NPQQIISLGS RQQNLPFPPN MAQDSSLPHH HHHQQHPQQL  60
LRHWRDTLNL SHRGMFTHLG PDGRPLFRPP TRPINTTKLY RGVRQRHWGK WVAVIRLPRN  120
RTRLWLGTFG TTEDAAMAYD REAFKLRGEN ARLDFPEMFL NKDKNEQVEC LLLLLQKEVT  180
GFLRNLFGEK CLHGSMLFLQ LGDLVALFGM IWIPPIIFFT NHTSFLMVRL RLKLEHKGLG  240
LTTLEEFSFP RGIFIIQKNT H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1998156463ATERF1
3gcc_A2e-1998156463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g13010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491721.18e-96ethylene-responsive transcription factor ERF053
TrEMBLA0A1S3TD862e-94A0A1S3TD86_VIGRR; ethylene-responsive transcription factor ERF053
STRINGXP_007149866.12e-84(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-42ERF family protein