PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun000188
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 413aa    MW: 45766.4 Da    PI: 6.3187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45968698PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-34573PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.71.3e-871734121242
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++ L++cA+a++++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++ykal+++e +   sse l+++++++ev+P++kf+++ aN 
  Vun000188 173 LKHILIACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPE---SSELLSYMHILYEVCPYFKFGYMSANG 269
                6899*****************************************************************9...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea++ eervHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  d++l++L v+p
  Vun000188 270 AIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAMSGCDVQLHNLGVRP 368
                *************************************************999899999************************.8999************* PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                gEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++v
  Vun000188 369 GEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLV 412
                ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.697147413IPR005202Transcription factor GRAS
PfamPF035144.4E-85173412IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQI EAYCLPQYRT LNQQLFYHDG GHGTHFSTPS SSELYCTLES  60
SSVAGSFTLY NSPSTLSFSP NGSPISQHES QSYPSDQYHS PENTYGSPLS GSCITDDLSS  120
FKHKLRELES VMLGPDSDNL DCYDSAISNG NNFASLEMDS WRQTMVAISS KNLKHILIAC  180
AKAIADNDLL MAQWLMDELR QMVSVSGDPI QRLGAYMLEG LVARLAASGS SIYKALRCKE  240
PESSELLSYM HILYEVCPYF KFGYMSANGA IAEAMKDEER VHIIDFQIGQ GSQWITLIQA  300
FAARPGGPPH IRITGIDDSQ SAYARGGGLH IVGRRLSKLA EHFKVPFEFH AAAMSGCDVQ  360
LHNLGVRPGE ALAVNFAFML HHMPDESVST QNHRDRLLRL VRSLSPKVVT LVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3718041226249Protein SCARECROW
5b3h_A2e-3718041225248Protein SCARECROW
5b3h_D2e-3718041225248Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940397.10.0scarecrow-like transcription factor PAT1
RefseqXP_027940398.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL71e-160PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A4D6MLT90.0A0A4D6MLT9_VIGUN; DELLA protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-153GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]