PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun000363
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 184aa    MW: 19264.9 Da    PI: 10.0698
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45823023PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-14001PU_refplantGDBView CDS
PUT-167a-Vigna_unguiculata-14002PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09101126227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt++C+ f     Ck+Gd+C+FaHg+
  Vun000363 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
                8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-83659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6199127IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-499126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-1499129IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6101126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDTRKRGRLK LSFNSNGGFK KSKQEMESLS TGVGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGYNAVAH IMNLTPAAPP ASRNVAALPP VPNGSAPAAV KTRICNKFNT AEGCKFGDKC  120
HFAHGEWELG KQIAPSFDDH RALGPTAAGR FGGRMEPSPG PATSFGSHAT AKISVEASLA  180
GAII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940285.11e-132zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-55C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D6M8131e-131A0A4D6M813_VIGUN; Far upstream element-binding protein
STRINGXP_007162316.11e-127(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-41C3H family protein