PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun000373
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 172aa    MW: 19886.7 Da    PI: 8.9976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45947754PU_unrefUnigeneView CDS
gnl|UG|Vun#S45948111PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-27959PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-161157248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ +Ed++l ++v++ G g+W+  +++ g++R++++ck+rw++yl
        Vun000373 11 GAWSSDEDQILFNYVQLTGEGNWTDLPQRAGLKRCGENCKHRWLNYL 57
                     79*******************************************97 PP
2Myb_DNA-binding43.38.5e-1463108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r +++ +E+el+++++k+lG++ W  Ia +++ gR++ ++k++w++yl
        Vun000373  63 RENFSWDEQELIIRLHKLLGNR-WCMIAGRLP-GRSEDEIKNYWNTYL 108
                      789*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.562157IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-18960IPR009057Homeodomain-like
SMARTSM007172.1E-10959IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-2610104IPR009057Homeodomain-like
PfamPF002496.3E-141157IPR001005SANT/Myb domain
CDDcd001671.44E-71257No hitNo description
PROSITE profilePS5129421.37758112IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2061112IPR009057Homeodomain-like
SMARTSM007175.2E-1362110IPR001005SANT/Myb domain
PfamPF002494.1E-1263108IPR001005SANT/Myb domain
CDDcd001675.66E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
METNNCCEKQ GAWSSDEDQI LFNYVQLTGE GNWTDLPQRA GLKRCGENCK HRWLNYLKPT  60
IPRENFSWDE QELIIRLHKL LGNRWCMIAG RLPGRSEDEI KNYWNTYLSK KVEEEKKVGS  120
RSVKSRSMSS VESPWFSQND LAMNSMDSPN PVIVRPKVVR LAKAVLPRLV GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221011227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902655.11e-126transcription factor MYB3-like
SwissprotQ9S9K97e-45MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A4D6NIG31e-124A0A4D6NIG3_VIGUN; Myb proto-oncogene protein
STRINGXP_007138671.12e-91(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-44myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]