PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun000555

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 546aa MW: 59493.9 Da PI: 9.5498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45828688	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-1535360	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vun000555 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12	0.00065	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Vun000555 146 WKCDKCSKKYAVQSDWKAHSKTC 168 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.0E-6	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.4E-7	69	92	No hit	No description
Pfam	PF12171	2.6E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	111	141	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.0E-5	134	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.4E-7	141	166	No hit	No description
SMART	SM00355	150	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
XQNQTQVSQH HQPSTAASST TTTTTTTTST TTTTPTTVPQ KKRRNQPGTP YPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSNKEPKRKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAHE SARHPSNLNP LGTHHLYGTN HMSLGLGAQL QNQAPSANSL 240 LSLGSAPKFE HLISPNLHHS SAFGVQSPPH SSFFITDPNQ AFQDLQSQQQ GPLFSTKQLH 300 GLMQLPDLQG TNNNSTSASS LSASANNTNL FNLSFFPNTN TSGSIINDQF SNISGGNDQG 360 TTTLYSSSSP VSNQVGSGLS SLFGNSSLQQ DNMSPHMSAT ALLQKAAQMG STTTTNGPCS 420 LLRGTEELGI RSRMESEHSN HLRGLMNSFA NGNASIFGNV KGNENNLGQF HNVVEEPKKM 480 SQNLGLCFGG SDKLTLDFLG VGGMVRNMNS GGFSQRDQQH SMGTMSPLDP KLESAQPNQN 540 FGASTL

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

XQNQTQVSQH HQPSTAASST TTTTTTTTST TTTTPTTVPQ KKRRNQPGTP YPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSNKEPKRKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAHE SARHPSNLNP LGTHHLYGTN HMSLGLGAQL QNQAPSANSL  240
LSLGSAPKFE HLISPNLHHS SAFGVQSPPH SSFFITDPNQ AFQDLQSQQQ GPLFSTKQLH  300
GLMQLPDLQG TNNNSTSASS LSASANNTNL FNLSFFPNTN TSGSIINDQF SNISGGNDQG  360
TTTLYSSSSP VSNQVGSGLS SLFGNSSLQQ DNMSPHMSAT ALLQKAAQMG STTTTNGPCS  420
LLRGTEELGI RSRMESEHSN HLRGLMNSFA NGNASIFGNV KGNENNLGQF HNVVEEPKKM  480
SQNLGLCFGG SDKLTLDFLG VGGMVRNMNS GGFSQRDQQH SMGTMSPLDP KLESAQPNQN  540
FGASTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	142	206	3	67	Zinc finger protein JACKDAW
5b3h_F	5e-34	142	206	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914230.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_027914231.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-136	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A4D6LKX7	0.0	A0A4D6LKX7_VIGUN; Regulatory protein SWI5
STRING	XP_007153117.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-106	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]