PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun000798

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 455aa MW: 50857.4 Da PI: 5.8634

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45826669	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-30225	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	416.5	2.4e-127	87	455	4	374
GRAS 4 lLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +L cA+avs++d a+ + + l +++s +gdp+qRl ay++e+L+arl +s++ +yk+l++++ + s+e +++++++++++P+ +f+++ aN I Vun000798 87 VLRVCAQAVSDDDVGTARGWMDNvLGKMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPT---SKELMSYMHILYQICPYWRFAYISANAVI 183 6788*************997627888***********************************9...99999******************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 ea+++e+r+HiiDf++ qG+QW L+qaLa+Rp+gppslR+Tgv++++s+ + le +gerL++fA+++gvpfef+ +a + ++ + +++pgE Vun000798 184 TEAMANESRIHIIDFQVAQGTQWYLLIQALAQRPGGPPSLRVTGVDDSQSFhaRGGGLEIVGERLSEFARSCGVPFEFHS-AAMSGCEVVRGSVEIRPGE 282 *******************************************9999889999*******************.66677777799**** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 alaVn+ + lh++ desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s+++ pr++++ri+ E+++l+r+ivn++ac Vun000798 283 ALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFVETLDYYTAMFESIDVACPRDDQKRISAEQHCLARDIVNMIAC 382 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eg+er+erhe l+kWr+rl++aGFk+ +ls++++ + ll++++++ yr+e+++++l+lgW++r + + SaWr Vun000798 383 EGSERVERHELLGKWRSRLSMAGFKQCQLSSSVMVATQNLLNEFSQN-YRLEHKDDALYLGWMNRHMATSSAWR 455 *****************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.134	58	436	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-125	87	455	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
ACGSDHHQSS DNTYGSPISG LSSVDDGHEL KHKLRELEIS LLGPDESDIE DSFGCCVRGS 60 SSRLDGASKQ NWEQIAENIP RFDLKGVLRV CAQAVSDDDV GTARGWMDNV LGKMVSVSGD 120 PIQRLGAYLL EGLRARLESS GNLIYKSLKC EQPTSKELMS YMHILYQICP YWRFAYISAN 180 AVITEAMANE SRIHIIDFQV AQGTQWYLLI QALAQRPGGP PSLRVTGVDD SQSFHARGGG 240 LEIVGERLSE FARSCGVPFE FHSAAMSGCE VVRGSVEIRP GEALAVNFPF VLHHMADESV 300 STENHRDRLL RLVKSLSPKV VTLVEQESNT NTSPFFYRFV ETLDYYTAMF ESIDVACPRD 360 DQKRISAEQH CLARDIVNMI ACEGSERVER HELLGKWRSR LSMAGFKQCQ LSSSVMVATQ 420 NLLNEFSQNY RLEHKDDALY LGWMNRHMAT SSAWR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

ACGSDHHQSS DNTYGSPISG LSSVDDGHEL KHKLRELEIS LLGPDESDIE DSFGCCVRGS  60
SSRLDGASKQ NWEQIAENIP RFDLKGVLRV CAQAVSDDDV GTARGWMDNV LGKMVSVSGD  120
PIQRLGAYLL EGLRARLESS GNLIYKSLKC EQPTSKELMS YMHILYQICP YWRFAYISAN  180
AVITEAMANE SRIHIIDFQV AQGTQWYLLI QALAQRPGGP PSLRVTGVDD SQSFHARGGG  240
LEIVGERLSE FARSCGVPFE FHSAAMSGCE VVRGSVEIRP GEALAVNFPF VLHHMADESV  300
STENHRDRLL RLVKSLSPKV VTLVEQESNT NTSPFFYRFV ETLDYYTAMF ESIDVACPRD  360
DQKRISAEQH CLARDIVNMI ACEGSERVER HELLGKWRSR LSMAGFKQCQ LSSSVMVATQ  420
NLLNEFSQNY RLEHKDDALY LGWMNRHMAT SSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-57	91	455	11	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027917834.1	0.0	scarecrow-like protein 13
Refseq	XP_027917835.1	0.0	scarecrow-like protein 13
Refseq	XP_027917836.1	0.0	scarecrow-like protein 13
Swissprot	Q9M0M5	0.0	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A4D6KSY1	0.0	A0A4D6KSY1_VIGUN; DELLA protein
STRING	XP_007154029.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	0.0	SCARECROW-like 13