PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun000818
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 451aa    MW: 49353.2 Da    PI: 9.204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45867119PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-8117PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0593115123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++C+k F r  nL+ H r H
  Vun000818  93 FICEICNKGFQRDQNLQLHRRGH 115
                89*******************88 PP
2zf-C2H211.40.001169191123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H + +
  Vun000818 169 WKCDKCSKKYAVQSDWKAHSKIC 191
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.81E-792115No hitNo description
Gene3DG3DSA:3.30.160.601.2E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02293115IPR015880Zinc finger, C2H2-like
PfamPF121715.3E-593115IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84593115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355220134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.81E-7164189No hitNo description
SMARTSM00355150169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTRED AAAVKHQPEM LPQFHSPHSL TSTTTTTNNT NASNTISQPP  60
PPVKKKRSLP GNPDPSAEVI ALSPNTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEVR KRVYVCPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKI CGKREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKANEG QIPKIGSNLQ  240
CQQIPNLVSS LPINTNVVPN PQQIGGTSEF NRGEQKHPLS LPHELMPMPA PKPFNNNTAM  300
AGTVFSRSLS STSSPSLQLS SNIFEENGPH LAAGSPHMSA TALLQKAAQM GATVTEKSFS  360
TNMAPPSFGV LQQQQPNGQS FMNQYMHSGQ HQQDPNVNIS AQYNGFGGGG GAQGNFYGSA  420
QQAENGAADE VWRNWSSKNA GFESFSATSS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33165223361Zinc finger protein JACKDAW
5b3h_F5e-33165223361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936924.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-115IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A4D6N3220.0A0A4D6N322_VIGUN; Regulatory protein SWI5
STRINGXP_007144938.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]