PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001046

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GeBP

Protein Properties

Length: 413aa MW: 45926.4 Da PI: 4.7882

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45800537	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-25361	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.3	9.8e-38	131	226	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ +k+++gke+sf+++hd+ +fe+s++iW Vun001046 131 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYHNVITKINDGKEFSFKSPHDRATFEISRRIWS 226 79*********************************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.7E-34	132	226	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
XSDTFETKQP NPVKTSKKES THYALRLTNS TPMPMASDLN DAVFPEEDLD DDDETQEDEE 60 EEDEDDDVLD DEETEPSHSV LAAITLAAPG SAVSQTLGTA STAIVVADSS PKRPRTEQVE 120 EKKALDDSRR LFQRLWTDED EIGLLQGFLD YTAQRGSSHH NDTALFYDQI KSKLQLGFNK 180 NQLVEKLRRL KKKYHNVITK INDGKEFSFK SPHDRATFEI SRRIWSNAAP ITGPVEDDDE 240 INPNPNPNPN PNFGHSAKTS LSRKRSRPRS EKREFHDGSA LNKDTNGIGN SNNNSNKDNE 300 NYNHKHSLQG LIEETVRSCV SPVLKELVNG GMGLGSGFGF GGRGFGVGGG FPLNPLQMPM 360 ALSSLNLGIG EMVTDEKWRR QQILELEVYS KRLELVQNEI KVALEELRSA GGG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

XSDTFETKQP NPVKTSKKES THYALRLTNS TPMPMASDLN DAVFPEEDLD DDDETQEDEE  60
EEDEDDDVLD DEETEPSHSV LAAITLAAPG SAVSQTLGTA STAIVVADSS PKRPRTEQVE  120
EKKALDDSRR LFQRLWTDED EIGLLQGFLD YTAQRGSSHH NDTALFYDQI KSKLQLGFNK  180
NQLVEKLRRL KKKYHNVITK INDGKEFSFK SPHDRATFEI SRRIWSNAAP ITGPVEDDDE  240
INPNPNPNPN PNFGHSAKTS LSRKRSRPRS EKREFHDGSA LNKDTNGIGN SNNNSNKDNE  300
NYNHKHSLQG LIEETVRSCV SPVLKELVNG GMGLGSGFGF GGRGFGVGGG FPLNPLQMPM  360
ALSSLNLGIG EMVTDEKWRR QQILELEVYS KRLELVQNEI KVALEELRSA GGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	116	PKRPRTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027937810.1	0.0	probable transcription factor At3g04930
Swissprot	F4K5T4	1e-84	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A4D6N0Y0	0.0	A0A4D6N0Y0_VIGUN; Uncharacterized protein
STRING	XP_007144806.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	1e-55	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]