PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001259

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 385aa MW: 42281.5 Da PI: 8.9654

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45958828	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-22897	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	147	170	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H+ + H Vun001259 147 FPCTACGEIFQKPHLLETHQTLkH 170 89******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	147	171	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	170	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	6.0E-6	173	290	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	1.15E-14	174	384	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.8E-6	320	384	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MASSIATFFN KFLYLLILLL HLGCFIFTTT TGGKKAPPSK KRKISPSSQP SSPSHPKFKT 60 HKALSSSWHF IKHLLSIKSC KTPKTATSQL SPQSSAATST TTVSAAAAHS LVSLTQPDPD 120 RKPPGSCPES DISADTNLFF PLRNDIFPCT ACGEIFQKPH LLETHQTLKH AVSDLSGSDP 180 GHNIVQIIFK SGWPESKPSP TITRILKIHN SPKILAKFEE YREVVKSKAA RHGALTRRRD 240 ERCIADGNEL MRFHCSTFLC DLGHSGDSSI CSQQFCNICG IIKSGFSPKL DGIATLSTSW 300 RAHVAIPDDV EREFRFMNVK RAMLVCRVIA GRVGSDSDDA EKADGGFDSV MARTETGVYT 360 RLDEEELLVF NPRAVLPCFV IVYSV

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MASSIATFFN KFLYLLILLL HLGCFIFTTT TGGKKAPPSK KRKISPSSQP SSPSHPKFKT  60
HKALSSSWHF IKHLLSIKSC KTPKTATSQL SPQSSAATST TTVSAAAAHS LVSLTQPDPD  120
RKPPGSCPES DISADTNLFF PLRNDIFPCT ACGEIFQKPH LLETHQTLKH AVSDLSGSDP  180
GHNIVQIIFK SGWPESKPSP TITRILKIHN SPKILAKFEE YREVVKSKAA RHGALTRRRD  240
ERCIADGNEL MRFHCSTFLC DLGHSGDSSI CSQQFCNICG IIKSGFSPKL DGIATLSTSW  300
RAHVAIPDDV EREFRFMNVK RAMLVCRVIA GRVGSDSDDA EKADGGFDSV MARTETGVYT  360
RLDEEELLVF NPRAVLPCFV IVYSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027932421.1	0.0	uncharacterized protein LOC114188098
TrEMBL	A0A4D6KNF0	0.0	A0A4D6KNF0_VIGUN; PolyADP-ribose polymerase
STRING	XP_007146728.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-105	C2H2 family protein