PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001345

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 377aa MW: 41018.1 Da PI: 6.3978

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45934030	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-34072	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.8e-10	178	236	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e k+L +l ++ l se+ Vun001345 178 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEAKTLSAQLTLYQRDTTGLSSEN 236 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-15	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	176	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-10	178	229	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-8	178	233	No hit	No description
Pfam	PF00170	4.7E-9	178	236	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.83E-23	179	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MATQTQDSPS NPNPNATSLT PSSSLFFRGA GASAAPVAGS GESHSHHRRA LSEVSYRLPD 60 DMMDLSPSDP FNGGASTASL EEIGSEDDLF STYIDVEKLG SSTNGAGRGN GSDQSGYGNG 120 TNGHHDSEKS PRDEERPRHR HSSSVDGSSS TNMFGEIMEA KKAMPPDKLA ELWNIDPKRA 180 KRILANRQSA ARSKERKARY IQELERKVQT LQTEAKTLSA QLTLYQRDTT GLSSENTELK 240 LRLQAMEQQA QLRDALNDAL MKEVERLKMA TGEVLNNHSE SFNMGMHQMP FAGSNFFSIP 300 PHSGPSSHQN MQLPPYGISQ SSMPAHQLQQ THSHQISDIL QNDQLGRLQG LDISSKGSSF 360 VKSEGPSISA NDSSTTF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MATQTQDSPS NPNPNATSLT PSSSLFFRGA GASAAPVAGS GESHSHHRRA LSEVSYRLPD  60
DMMDLSPSDP FNGGASTASL EEIGSEDDLF STYIDVEKLG SSTNGAGRGN GSDQSGYGNG  120
TNGHHDSEKS PRDEERPRHR HSSSVDGSSS TNMFGEIMEA KKAMPPDKLA ELWNIDPKRA  180
KRILANRQSA ARSKERKARY IQELERKVQT LQTEAKTLSA QLTLYQRDTT GLSSENTELK  240
LRLQAMEQQA QLRDALNDAL MKEVERLKMA TGEVLNNHSE SFNMGMHQMP FAGSNFFSIP  300
PHSGPSSHQN MQLPPYGISQ SSMPAHQLQQ THSHQISDIL QNDQLGRLQG LDISSKGSSF  360
VKSEGPSISA NDSSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027930692.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-104	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A4D6KQF4	0.0	A0A4D6KQF4_VIGUN; Uncharacterized protein
STRING	XP_007146883.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	5e-91	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]