PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001376

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 374aa MW: 41178.8 Da PI: 10.1057

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45867860	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-4308	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.6e-32	239	296	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+fpr+YY+C++ gCp++k+ver+++dpk++++tYegeH+h Vun001376 239 DEYSWRKYGQKPIKGSPFPRGYYKCSTVrGCPARKHVERAQDDPKMLIVTYEGEHRHA 296 9**********************9888**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.1E-15	197	235	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.0E-33	225	298	IPR003657	WRKY domain
PROSITE profile	PS50811	32.386	232	298	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	235	298	IPR003657	WRKY domain
SMART	SM00774	6.3E-38	237	297	IPR003657	WRKY domain
Pfam	PF03106	4.3E-27	239	295	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
PKPISFVSSH NSCSCFMALD MVDPVPRTRM EEQLAIQEAA SAGLKSMEHF IRLLSPSACN 60 SSSFSSNNNN LDCSEITDFT VSKFKQVINL LNRTGHARFR RAPPQPQPQA PPQPQPQPQP 120 QPQPQPQQGF TLDFVKPTIL NSKPCNKDET LTLSTTTTTS SSFLSSVTND ASVSDGKIGP 180 FLPPSAAKPP LSSSHRKKCR EAALSAKPSC HCSKKRKSRV KQTIRVPAIS SKIADIPPDE 240 YSWRKYGQKP IKGSPFPRGY YKCSTVRGCP ARKHVERAQD DPKMLIVTYE GEHRHALPLP 300 AATGGGLAFE PVSQRRGVGN LREVPSGRDG NGGCEAGVRK KWAWKSTFAV WTLTESSKFD 360 EDFCVNLTRN EMKI

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

PKPISFVSSH NSCSCFMALD MVDPVPRTRM EEQLAIQEAA SAGLKSMEHF IRLLSPSACN  60
SSSFSSNNNN LDCSEITDFT VSKFKQVINL LNRTGHARFR RAPPQPQPQA PPQPQPQPQP  120
QPQPQPQQGF TLDFVKPTIL NSKPCNKDET LTLSTTTTTS SSFLSSVTND ASVSDGKIGP  180
FLPPSAAKPP LSSSHRKKCR EAALSAKPSC HCSKKRKSRV KQTIRVPAIS SKIADIPPDE  240
YSWRKYGQKP IKGSPFPRGY YKCSTVRGCP ARKHVERAQD DPKMLIVTYE GEHRHALPLP  300
AATGGGLAFE PVSQRRGVGN LREVPSGRDG NGGCEAGVRK KWAWKSTFAV WTLTESSKFD  360
EDFCVNLTRN EMKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	225	298	2	74	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	216	RKKCREAALSAKPSCHCSKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027942239.1	0.0	WRKY transcription factor WRKY51-like
Swissprot	Q9SV15	3e-96	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A4D6NLM5	0.0	A0A4D6NLM5_VIGUN; WRKY transcription factor 22
STRING	XP_007138748.1	1e-147	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	5e-81	WRKY DNA-binding protein 11

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]