PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001399
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 372aa    MW: 39938.6 Da    PI: 8.5704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45815555PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-21454PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000893659123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               +kC+ C+k  s+ s +  H    H
  Vun001399 36 FKCHVCHKKLSTASGMAIHVLQvH 59
               89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.345766IPR003656Zinc finger, BED-type
SMARTSM00355201235IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.74E-51261No hitNo description
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.13659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGKKKKRVSS KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK  60
ESVTKVPNAK PGRESTDIEI YGMQGIPPDI LAAHYGEEED DVPSKAAKVD IPPTQLVGGM  120
RPPPLGTGYP PRSALPAIPQ VYNPAVPLPP NAWMVPPRPQ PWFSQPPAVS VPPPAPYTQQ  180
PLFPVQNVRP PLPATAPAAL QTQIAPPGLL TSAPVPVSQP LFPVVGNNHT TTQSLTYSAP  240
PLPSSVPSVT PVMSTNVPVD THLSTHSSVT SSYQAIGVPG AAASNSHSYA SGPNTGGPSI  300
GPPPVIANKA PASQPATNEV YLVWDDEAMS MEERRMSLPK YQVHDESSQM SSIDAAIDKR  360
ILESRLAGRM AF
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919414.10.0protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G01e-151SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1S3VCF30.0A0A1S3VCF3_VIGRR; protein SUPPRESSOR OF FRI 4 isoform X3
STRINGGLYMA05G34280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]