PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001552

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 359aa MW: 39936.3 Da PI: 5.0668

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45907830	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-14460	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.6e-19	101	150	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Vun001552 101 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 150 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.7E-32	101	160	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.25E-22	101	159	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.092	101	158	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-37	101	164	IPR001471	AP2/ERF domain
CDD	cd00018	1.18E-32	101	159	No hit	No description
Pfam	PF00847	7.9E-12	102	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-11	102	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-11	124	140	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MCGGAIISDF IPAAVTARSR RITAGYLWSD LKKRTSEVIH SDDDFEADFR DFKDDSDIET 60 DVDADHEVKP FAFSASSQRA VKSVAFNGGA EKSAKRKRKN QYRGIRQRPW GKWAAEIRDP 120 RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPEE ASVKRSKVNP LGNRKIVQPN 180 VHKFNAGNNQ KDLPCPMDLM EQKPLVNQFA DMGSFPGSGN GLRSLPSNDD VTLYFSSDQG 240 SNSFDYADLG WSEKAPKTPE ISSMLCAPLD RDSHFAQDAN HQTNSQDVVS MQDDSSKTLS 300 EELVDIESEL KFFQMPYLGG SWDDTSLESL LSCDTTQDGG NLMNLWSFDD IPSMAGGVF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MCGGAIISDF IPAAVTARSR RITAGYLWSD LKKRTSEVIH SDDDFEADFR DFKDDSDIET  60
DVDADHEVKP FAFSASSQRA VKSVAFNGGA EKSAKRKRKN QYRGIRQRPW GKWAAEIRDP  120
RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPEE ASVKRSKVNP LGNRKIVQPN  180
VHKFNAGNNQ KDLPCPMDLM EQKPLVNQFA DMGSFPGSGN GLRSLPSNDD VTLYFSSDQG  240
SNSFDYADLG WSEKAPKTPE ISSMLCAPLD RDSHFAQDAN HQTNSQDVVS MQDDSSKTLS  300
EELVDIESEL KFFQMPYLGG SWDDTSLESL LSCDTTQDGG NLMNLWSFDD IPSMAGGVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-21	101	158	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	6e-21	100	163	13	77	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269\|PubMed:22020282, ECO:0000269\|PubMed:22530619}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269\|PubMed:22020282}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027903872.1	0.0	ethylene-responsive transcription factor RAP2-12-like
Swissprot	Q9SSA8	1e-68	RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBL	A0A4D6NI19	0.0	A0A4D6NI19_VIGUN; EREBP-like factor
STRING	XP_007139068.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	5e-70	related to AP2 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kosmacz M, et al. The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration. Plant Cell Environ., 2015. 38(6): p. 1094-103 [PMID:25438831] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Gonzali S, et al. Universal stress protein HRU1 mediates ROS homeostasis under anoxia. Nat Plants, 2015. 1: p. 15151 [PMID:27251529] Paul MV, et al. Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia. Plant Physiol., 2016. 172(1): p. 141-53 [PMID:27372243] Shahzad Z, et al. A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics. Cell, 2016. 167(1): p. 87-98.e14 [PMID:27641502] Yao Y, et al. ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis. New Phytol., 2017. 213(4): p. 1667-1681 [PMID:28164334] Giuntoli B,Licausi F,van Veen H,Perata P Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants. Front Plant Sci, 2017. 8: p. 591 [PMID:28487707] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Giuntoli B, et al. Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana. Plant Cell Environ., 2017. 40(10): p. 2333-2346 [PMID:28741696]