PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001738

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 346aa MW: 37568.5 Da PI: 6.9967

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45800371	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-4879	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.4e-33	75	129	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Vun001738 75 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 129 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.569	72	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-32	72	130	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-16	75	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-24	75	130	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	77	128	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-15	170	215	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MATHPXLGSL SLLSLKKLLS LLSEASGVPP LKEDVPEAHH PHDGIVQQDD MQAAASNLSH 60 SHKGDPCLVL TADPKPRLRW TQDLHERFVD AVTQLGGASK ATPKAIMRTM NVKGLTLFHL 120 KSHLQKYRLG KQSGKDVGEG CKDGSYLLES PGTENTSPKL PTSDTNEGYE IKEALRAQME 180 VQSKLHLQVE AEKHLQIRQD AERRYMAMLE RACKMLADQF IGATVIDTDS QKFQAIGSKT 240 PRGTLVDPLG FYSLPSTEVA GVNVPDEEIA PSLPPQRADC STESCLTSHE SSGGLTLEGS 300 PGGGKRRMLG MDSMAAPLIW SEAKMRTQAI NVAQGNHPQG ITRYGM

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MATHPXLGSL SLLSLKKLLS LLSEASGVPP LKEDVPEAHH PHDGIVQQDD MQAAASNLSH  60
SHKGDPCLVL TADPKPRLRW TQDLHERFVD AVTQLGGASK ATPKAIMRTM NVKGLTLFHL  120
KSHLQKYRLG KQSGKDVGEG CKDGSYLLES PGTENTSPKL PTSDTNEGYE IKEALRAQME  180
VQSKLHLQVE AEKHLQIRQD AERRYMAMLE RACKMLADQF IGATVIDTDS QKFQAIGSKT  240
PRGTLVDPLG FYSLPSTEVA GVNVPDEEIA PSLPPQRADC STESCLTSHE SSGGLTLEGS  300
PGGGKRRMLG MDSMAAPLIW SEAKMRTQAI NVAQGNHPQG ITRYGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	75	131	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	75	131	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	75	131	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	75	131	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	75	131	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027933133.1	0.0	protein PHR1-LIKE 2-like isoform X2
Swissprot	Q94A57	1e-63	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0L9VE76	0.0	A0A0L9VE76_PHAAN; Uncharacterized protein
STRING	XP_007147561.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-65	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]