PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001837
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 339aa    MW: 37467.4 Da    PI: 10.2461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45823170PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-6138PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-08240289147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g W+ +  +     k+Rt  ++k++w ++
        Vun001837 240 RRPFSVAEVEALVQAVEKLGTGKWRDVKLRAFdnaKHRTYVDLKDKWKTL 289
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.81E-841131IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.515235294IPR017930Myb domain
SMARTSM007175.6E-7239292IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-11240290IPR009057Homeodomain-like
SuperFamilySSF466893.51E-16241322IPR009057Homeodomain-like
CDDcd116602.64E-18241291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XRSGDAYFSL KNETNQSVSY SSSGMSKDHG TSSLGHSALR SRDSHVKLRI KSFRVPELFI  60
EIPETATIGS LKRTVMEAVT AVLGGGLRVG VILHGKKVRD DSKTLLQTGI SHDNHLDALG  120
FALEPNFSQN LPPACATSSL RVPSADMPQP FMGYPSSPAV IHQRIHGFSN MLAEHQATGL  180
GNLVESDHDS APSPINTSGE KKLSDSKELI TVPEMGMEAL AVLPGHQKSK RTEIAQRRIR  240
RPFSVAEVEA LVQAVEKLGT GKWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR  300
RGEPVPQELL DRVLTAHAYW SQQQTKQQLK HHSKPCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-602243391112Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929276.10.0telomere repeat-binding protein 5-like isoform X2
SwissprotQ9C7B11e-114TRP3_ARATH; Telomere repeat-binding protein 3
TrEMBLA0A1S3TWF60.0A0A1S3TWF6_VIGRR; telomere repeat-binding protein 5 isoform X2
STRINGXP_007150334.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-93TRF-like 2
Publications ? help Back to Top
  1. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  2. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]