PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001902
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 334aa    MW: 36382.1 Da    PI: 7.592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45906005PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-28435PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-062242611254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Vun001902 224 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 261
                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-11222278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-6222266No hitNo description
Gene3DG3DSA:4.10.280.108.3E-9226268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDGGSSHDSQ IQKDWNPKNF SSAGGQGSTV DAFKSMNQEF SLDQQSLNSV VTSTGSLSGG  60
FPVVSASYGY PSTLIQGLYD PEPQPQPQNS LFTNPPMSYS SSTANYGTCS NELSPTWSKI  120
SSLLKPSTPK QQLSGLHFSN NTSXWNGSAE ALHDIRAGVF ASSQAQYQTP KFEEKSNSPN  180
TLLNKLKREE SPDATSSAKK NSSEPAFKRQ RIETPSPLPT FKVRKEKLGD RITALQQLVS  240
PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYIKNGAPIQ HQQDCDNLKE SEGRKQDLRS  300
RGLCLVPISS TFPVANESSV DFWTPTFGGA VIGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027933732.10.0transcription factor bHLH112-like isoform X1
SwissprotQ8GXT31e-56BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A4D6KNG90.0A0A4D6KNG9_VIGUN; Myc-type
STRINGXP_007148280.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]