PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001992

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 37056.9 Da PI: 4.5768

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45799258	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-1628	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k Vun001992 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139 56689***********************************************98 PP
2	HD-ZIP_I/II	131	4.6e-42	86	177	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+++ Vun001992 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVQENDKLKAEVNS 177 9**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-19	77	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.378	81	141	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	83	145	IPR001356	Homeobox domain
CDD	cd00086	1.17E-17	84	142	No hit	No description
Pfam	PF00046	2.5E-16	86	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-19	88	148	IPR009057	Homeodomain-like
PRINTS	PR00031	5.1E-6	112	121	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	116	139	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.1E-6	121	137	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.5E-18	141	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAGGKLHAAS TMSLLLQNER LPCSSEVLES LWAHTSNPAS FQGSKSMVDF ENVSGGRVTD 60 RPFFQALEKE ENCDDDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQNRRARFKT KQLEKDYGTL KASYDRLKGD YESLVQENDK LKAEVNSLES 180 KLILRDKEKE NSDDKSSPDA VNSPHKEPMD LISNSTSENG TKVSLPIMVT CKQEDANSAK 240 SDVLDSDSPH CTDGNHPSSF VEPADSSHAF EPDHSDFSQD EEDNLSETLL TLPCLPKVEE 300 PCYDHPPENP CNFGFHVEDQ TFCFWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARFKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157405.1	0.0	hypothetical protein PHAVU_002G067200g
TrEMBL	A0A4D6LQ03	0.0	A0A4D6LQ03_VIGUN; Homeobox-leucine zipper protein
STRING	XP_007157405.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-47	homeobox 1