PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002051
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 324aa    MW: 35372.3 Da    PI: 6.5148
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45845925PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-403PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35171072101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
     Vun002051  17 FLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGEKRLLSEIQ 104
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Vun002051 105 RRK 107
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-376100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5513106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.26E-3514106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.1E-201740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3217106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-205567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
XTASAAADSQ RSIPTPFLTK TFQLVDDQSI DDVISWNDDG STFIVWNPTV FARDLLPKYF  60
KHNNFSSFVR QLNTYGFRKV VPDRWEFSNE CFRRGEKRLL SEIQRRKISL PAPSTSLSPT  120
APATVAVPSP MPLTAIPIIS PSNSGEEQVI SSNSSPSLAP AELIDENERL RKENVQLTKE  180
LSEMRSLCNN IYALMSNYAN ANGNGTYQAD GGAGGAQGSR ESGMTAVKPL DLMPTKRISG  240
EDAAELNPKL FGVAIGAKRA REGGGSGGDC GEEGGRANKD TLLRLHHPGP ADVKSEPLDC  300
QNHRENQETP WLSQCHIANQ RVCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241710629129Heat shock factor protein 1
5d5v_B1e-241710629129Heat shock factor protein 1
5d5v_D1e-241710629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027924957.10.0heat stress transcription factor B-2a-like
SwissprotQ9SCW42e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A4D6M0Z70.0A0A4D6M0Z7_VIGUN; Heat shock transcription factor
STRINGXP_007152318.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]