PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002081
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 322aa    MW: 35437.3 Da    PI: 7.4155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45801672PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-24133PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000411892271255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vun002081 189 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 227
                6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.706177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.85E-6187231No hitNo description
SuperFamilySSF474593.66E-10187238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7191234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGNPNWWTT HPPSSFIPNQ YLLGSSSIPF NSSTQNPDQP PHSLSQLLFT GLPGEEERVA  60
FSHFQSKKLD EWNEHMLNPS PINPMVDVIK QEVSQSGSFF HQGHDQEFQV SGAPWSHMVP  120
VSSSPRSSVV ASFSSNNLLD FTYNKEDHRK NQLPPDHTSE CNNNTTATAG VYKKTKSQPS  180
SSQPPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQGQI EALSSPYLGN  240
GSKNMRNPQS VHGERNSVFP EDPGQLLNDN GLKRKGAPNQ DGKDKAKDLR SRGLCLVPVS  300
CTQHVGNENG ADYWAPAYGS GF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027908390.10.0transcription factor bHLH68-like isoform X2
SwissprotQ8S3D14e-63BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D6MKY40.0A0A4D6MKY4_VIGUN; Myc-type
STRINGGLYMA07G02120.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]