PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002280
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 312aa    MW: 34558.2 Da    PI: 10.243
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45819741PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-3894PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18176209134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C+ C+t+kTplWR gp g+k+LCnaCG+++rk +
  Vun002280 176 CVDCHTSKTPLWRTGPTGPKSLCNACGIRQRKAR 209
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-17170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.02170206IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12171212No hitNo description
Gene3DG3DSA:3.30.50.101.0E-15174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.02E-11175205No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003205.9E-16176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIPTYRYSVV SSPMSIDLNE DQDHTHTLFS TIHQASSSSS SLSTSVLFNP DQDQGRFCYC  60
ESKHLQEAQK IVCFSGSWDN PAEKIENGSD LKLRLWKKEE CDGLLGEDSS TNWMPPKMRM  120
VRKIMVSDQT VSHIADISNS KQIKAKEKNP TLSQLVTDDS NYNSSSNKNS ATARVCVDCH  180
TSKTPLWRTG PTGPKSLCNA CGIRQRKARR AIAAAAATTT GNGTNRSEAK KSEARKGKKL  240
RSKGKKSKTG GAPVPLKKKH KPAKHRKKFG AFEDLSVRFQ QVFPQDEKEA AILLMALSHG  300
LLHGFPSDRY LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256267KKKHKPAKHRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902406.10.0GATA transcription factor 21-like
TrEMBLA0A4D6NKP50.0A0A4D6NKP5_VIGUN; Uncharacterized protein
STRINGXP_007138732.11e-141(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-15cytokinin-responsive gata factor 1