PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002287
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 311aa    MW: 33989.4 Da    PI: 10.1973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45807441PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-10719PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31239296359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Vun002287 239 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 296
                99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-17190235IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33225296IPR003657WRKY domain
PROSITE profilePS5081130.894232298IPR003657WRKY domain
SuperFamilySSF1182903.53E-27234297IPR003657WRKY domain
SMARTSM007742.1E-38237297IPR003657WRKY domain
PfamPF031062.7E-27239295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
RNDTFAEEDA VREAASGLES VEKLIRLLSH AQLQQLQQQS HATNSKSSME IESDYGAVAD  60
VAVSKFKKVI SLLGRTRTGH ARFRRAPVPP PPPPPPPPSE PRFYRATPLQ QIPPPTEHPF  120
IPKNGPIETK DSSKTINFSY SNSFVSSLTG DTDTKQPSSS SPAAATPFQI TNLSQVSSAG  180
KPPISTSSLK RKCSSDNLGS AKCGSSSSRC HCSKKRKMRL KRVVRVPAIS LKMADIPPDD  240
YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPSMLVVTYE GEHNHTLSAV  300
EATTNLILES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212342991478Probable WRKY transcription factor 4
2lex_A1e-212342991478Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914387.10.0probable WRKY transcription factor 15 isoform X2
SwissprotO221768e-91WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A4D6LTJ50.0A0A4D6LTJ5_VIGUN; WRKY transcription factor 22
STRINGXP_007156770.11e-180(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-68WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]