PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002326
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 310aa    MW: 34282.4 Da    PI: 4.5398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45936869PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-9635361PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-092261344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      WT+ E +ll++ v ++G + W+++a+ ++ ++t  +c+s++
        Vun002326 22 VWTEGEILLLLESVLKHGDD-WELVAQSVQ-TKTKLDCISKL 61
                     6*****************88.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-51358IPR009057Homeodomain-like
SuperFamilySSF466897.8E-91873IPR009057Homeodomain-like
PROSITE profilePS5129317.271869IPR017884SANT domain
SMARTSM007173.9E-61967IPR001005SANT/Myb domain
PfamPF002493.2E-92261IPR001005SANT/Myb domain
CDDcd001679.63E-62360No hitNo description
PfamPF164957.8E-21219294IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
KRSAEDFVLS ESSENSGKHD TVWTEGEILL LLESVLKHGD DWELVAQSVQ TKTKLDCISK  60
LIELPFGELM LGPAHRNVNV NSANGIVVNN TKQVQSSSSD YQEISKTKDQ PPELTNENEQ  120
NGDATKESPS KRQRVTPLSD SSGSLMNQVG LISNVVDPHI TAAAADAAVS ALCDENLCPR  180
EIFDVEEDSA RDLEGEGLEV ERSSISEIPL PLRVRAATAT ALGAAAARAK LLADQEVREI  240
EQLVATIIEA QIDKLLHKVK HFDDLELLME KEHAEVENLK ESILTERIDV LRRTFRSGIT  300
RWKDYSYVKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904391.10.0SWI/SNF complex subunit SWI3A
SwissprotQ8W4755e-62SWI3A_ARATH; SWI/SNF complex subunit SWI3A
TrEMBLA0A4D6NTU50.0A0A4D6NTU5_VIGUN; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
STRINGXP_007137507.10.0(Phaseolus vulgaris)
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]