PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002352
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 308aa    MW: 33487 Da    PI: 7.1281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45813392PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-13024PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10157205355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Vun002352 157 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 205
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-11152209No hitNo description
SuperFamilySSF474593.4E-17152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17155222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7157205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
PKVHSYASRG FSEMVGAAAP FGQHGSGDVA NSGYPPHYNP IKEAQINGEQ SQVEDSIPEE  60
EAPGSGPSGN RRKRGLDHNS TFSPNKNAES ETVKDSPGRA CDGPKEHEKK PKVEQNNSAD  120
LRGKQSAKQA KDNSSQSGEA PKENFIHVRA RRGQATNSHS LAERVRREKI SERMRLLQEL  180
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNFDVDRIL SKDILQSRIG  240
HGISAYGPGI NSSHTFPSGN FHGTLAGMPS TSSQFPPLPQ NVLDHEFQSF YGIGYDSNTA  300
LDNLGPNG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939969.10.0transcription factor bHLH74
RefseqXP_027939970.10.0transcription factor bHLH74
RefseqXP_027939971.10.0transcription factor bHLH74
SwissprotQ6NKN94e-74BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A4D6MCG50.0A0A4D6MCG5_VIGUN; Phytochrome-interacting factor 3
STRINGXP_007160954.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]