PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002380
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 306aa    MW: 34598.1 Da    PI: 7.669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45793611PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-11697PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.1e-14116165255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp++   + k+  + +  tae+Aa a+++a++k++g
  Vun002380 116 HYRGVRQRP-WGKWAAEIRDPKK---SsKS-VVRNLETAEDAALAYDRAALKFKG 165
                6********.**********955...3244.5799*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-25115174No hitNo description
Gene3DG3DSA:3.30.730.102.2E-24116174IPR001471AP2/ERF domain
PROSITE profilePS5103219.928116173IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-16116174IPR016177DNA-binding domain
SMARTSM003809.4E-26116179IPR001471AP2/ERF domain
PfamPF008471.2E-7116165IPR001471AP2/ERF domain
PRINTSPR003671.0E-13117128IPR001471AP2/ERF domain
PRINTSPR003671.0E-13155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
XEQKKITSKN IKEHREAXLK VDPRRHGKLP LSSETSKEEE KEDTVQEFDA YATWSSETDM  60
SAMVSALSQV MGTSNRNPPM SQSTSFPFSN FDTKDQPQPQ PQPQPSSDKG VTKKAHYRGV  120
RQRPWGKWAA EIRDPKKSSK SVVRNLETAE DAALAYDRAA LKFKGTKAKL NFPERVHHNV  180
SFMHQNHESS SNTNTFPSHA TSNAVSSAHD VAAPPSFSTH DQHGHQLSPN LLQYAQILSS  240
DDAQFPYYTS HLFNNQQQHQ QHQQQQQQDP FSSQFSTTFS STSSQASYFY NHQQQFDEQG  300
HGHSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22116176263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-22113177267ATERF1
3gcc_A3e-22113177267ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929055.11e-141ethylene-responsive transcription factor ERF113
TrEMBLA0A4D6NGC21e-132A0A4D6NGC2_VIGUN; EREBP-like factor
STRINGXP_007139323.11e-102(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-28related to AP2 6l