PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002433
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 303aa    MW: 33069.8 Da    PI: 4.4828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45810172PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-25267PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024277300123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+C+ C++sF++ + L++H +  H
  Vun002433 277 YSCKPCNRSFKTEDGLNSHNKAkH 300
                89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.822277303IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-4277301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFWGVEVKS GESLKVDPGD DKIIHLSNAC LGDVTKAKGG ESVALNVKFG NQKLVLGTLS  60
TAKFPQISYD LIFEKEFELS HSWKNGSVFF TGFKAQSQSE SDNDEDSDDL DEDIPVSAAN  120
GKPEFEVKHG VKPDEAKQKK TTDPKKNEKV KEKDANGEDE DSSESDSDGD SSEDKPTANG  180
DIESSEGDED SDDEDDDEDE DDEESDEETP KKIEAGKKRN IDSANKTTVP VKKAKFVTPQ  240
KPDSKNVVHV ATPHPSKQAG KAIADNKRQT PKSGGDYSCK PCNRSFKTED GLNSHNKAKH  300
SAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027930993.10.0histone deacetylase HDT1 isoform X2
TrEMBLA0A4D6MDZ31e-160A0A4D6MDZ3_VIGUN; Uncharacterized protein
STRINGGLYMA03G34850.31e-129(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-33histone deacetylase 3