PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002513

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 299aa MW: 32244.6 Da PI: 4.7454

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45919988	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-15777	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	274	296	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k F + + L++H + H Vun002513 274 SCGTCKKNFANEDGLQQHKKAkH 296 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.115	273	299	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	275	296	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEFWGVEVKV GQTVKVDPMD PVSAYIHISQ VALGEAKKEK ANEPVVVYVK VGDQKIVLGT 60 LKRDDIPHLS LDLVLDSDSE LSHSSKTASV FFCGYKVLTD EGNISDFSDS DEEEEDLPLK 120 GQDNGKPVTK VEGAKVTKPS KPAPVKGASV KQAKTVDPKK DEEDDSDSDE SDDELAGIDE 180 SESSDEMDDD SESDEESESD EETPVKKVNQ GKKRQNESAS KTPVSSKKAK TATPEKTDGK 240 KNVHVATPYP TKKGGKTPKN PTKGQSPISA GQLSCGTCKK NFANEDGLQQ HKKAKHGGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027909053.1	0.0	histone deacetylase HDT1-like
Swissprot	Q8LJS2	1e-146	HDT1_SOYBN; Histone deacetylase HDT1
TrEMBL	A0A4D6LHP9	0.0	A0A4D6LHP9_VIGUN; Uncharacterized protein
STRING	GLYMA12G09000.1	1e-145	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	3e-19	histone deacetylase 2C