PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002532
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 298aa    MW: 31599.8 Da    PI: 9.4238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S50217466PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-13640PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09102127227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ f     Ck+Gd+C+FaHg+
  Vun002532 102 KTRLCNKFNTAEGCKFGDKCHFAHGE 127
                8***********************96 PP
2zf-CCCH36.21e-11265289126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ G C +G+rC+FaHg
  Vun002532 265 FKTKLCENFAK-GSCTFGERCHFAHG 289
                69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.84259No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-898131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206101128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6102127IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.62E-15163243IPR004088K Homology domain, type 1
SMARTSM003221.7E-9171241IPR004087K Homology domain
PROSITE profilePS5008413.9172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.4E-15172241IPR004088K Homology domain, type 1
PfamPF000133.6E-10174238IPR004088K Homology domain, type 1
CDDcd001051.83E-12176237No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-15261295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-8263294IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868264291IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDHRKRGRSE AAFNVNGAAK KFRPETDSFP TGIGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGFKAVSQ LINVGSDPAI PHVGRNPIPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK  120
CHFAHGEWEL GRPTAPSYED PRVMGQMPSS RIGGRVEPPL PAHGAAASFG ASATAKISIN  180
AALAGAVIGK GGVNSKQICR VTGAKLAVRD HDTDSNLRNI ELEGSLDQIK QASAMVHELI  240
LNLSSASGPP MKTFTTQTSA PTSNFKTKLC ENFAKGSCTF GERCHFAHGT DDLRKTGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936932.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D6MZR40.0A0A4D6MZR4_VIGUN; Uncharacterized protein
STRINGXP_007142616.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-52C3H family protein