PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002571
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 297aa    MW: 32274.4 Da    PI: 4.4645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45921883PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-8623PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05272294223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+k+F++   L++H +  H
  Vun002571 272 VCKSCSKTFNTDTGLQQHTKAkH 294
                7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.699271297IPR007087Zinc finger, C2H2
PROSITE patternPS000280273294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFWGAEVKV GESVKVDPTE FEACIHLSQA ALGEGKKDKA NEPVVLYLKV GEQKFVLGTL  60
SREKIPQISL ELVLEKEFEL SHSSKSASVH FCGYKAYYSG DDSEEDDFTD SDEDIPLVNT  120
ENGKLEKKAE ELKALVSKKL DAKAGAAAKK VKVVEPEKDN EDSDDDSDED DALGISDEEM  180
EDADSDDSDE DDDSDEDGDE ETPPKKANLA KKRPNESAAK TPVSSKKAKN ASPEKTEGKK  240
NLKAETPQSV KKGGKTPNTE AKDKSPKSGG LVCKSCSKTF NTDTGLQQHT KAKHGDQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926011.10.0histone deacetylase HDT1-like isoform X1
SwissprotQ8LJS27e-89HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A1S3TTN21e-168A0A1S3TTN2_VIGRR; histone deacetylase HDT1
STRINGXP_007150109.11e-146(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-28histone deacetylase 2C