PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002610
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 295aa    MW: 32599.4 Da    PI: 9.8209
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45934038PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-7592PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15968155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Vun002610  9 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 68
               57*******************666664478446*************************98 PP
2AP251.62.3e-16111163156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g+
  Vun002610 111 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRGA 163
                57****************988532...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-12968IPR001471AP2/ERF domain
CDDcd000186.12E-22978No hitNo description
SuperFamilySSF541713.01E-18978IPR016177DNA-binding domain
SMARTSM003804.2E-301082IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-171077IPR001471AP2/ERF domain
PROSITE profilePS5103219.441076IPR001471AP2/ERF domain
PRINTSPR003676.4E-71122IPR001471AP2/ERF domain
PfamPF008471.2E-10111162IPR001471AP2/ERF domain
CDDcd000182.42E-11111170No hitNo description
SuperFamilySSF541712.75E-18111171IPR016177DNA-binding domain
SMARTSM003806.0E-31112176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-19112170IPR001471AP2/ERF domain
PROSITE profilePS5103219.164112170IPR001471AP2/ERF domain
PRINTSPR003676.4E-7152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEEKAARAYD  60
LAALKYWGPT ATTNFPVSNY SKELEEMKHA TKQEFIASLR RKSSGFSRGA SIYRGVTRHH  120
QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGANAVTNFE MNRYDVEAIM  180
KSALPVGGAA KRLKLSLESE QKVGVSSSQQ NPPCGNVSGS INFSAIHQPI ASIPCGIPFD  240
SSAAYYHHNL FQHFHPSNAG TAVSTVTSGN ATGLTALPPP ATTAAEFFIW PHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914804.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_027914805.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N81e-134AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A0S3T2I50.0A0A0S3T2I5_PHAAN; Uncharacterized protein
STRINGXP_007158361.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-135AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]