PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002634
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 293aa    MW: 30825.3 Da    PI: 9.7999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45933789PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-26478PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-073659225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  Vun002634 36 KSKPCTKFFSTSGCPFGESCHFLH 59
               7789******************** PP
2zf-CCCH28.42.8e-09100125227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt++C+ f     Ck+Gd+C+FaHg+
  Vun002634 100 KTRICNKFNTAEGCKFGDKCHFAHGE 125
                8***********************96 PP
3zf-CCCH375.8e-12260284126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ G C +GdrC+FaHg
  Vun002634 260 FKTKLCENFAK-GSCTFGDRCHFAHG 284
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.43461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7563462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-63559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-83659IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1495129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-896129IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-498125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6198126IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-15155236IPR004088K Homology domain, type 1
SMARTSM003224.9E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.739166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.0E-16167234IPR004088K Homology domain, type 1
CDDcd001053.10E-15168231No hitNo description
PfamPF000135.4E-12168231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-16255290IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8259289IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDLRKRGRPE LAATLNGAVK KTKQDLESSS GGVGSKSKPC TKFFSTSGCP FGESCHFLHF  60
VPGGYNVVAH MMNLKPAAPP SRAVAAPPPI PNGSTPSAVK TRICNKFNTA EGCKFGDKCH  120
FAHGEWELGK PIAPSFDDHR PLGPPSAGRM AGRIEPPPLA GSFGAISTAK ISVEASLAGA  180
IIGKGGVNSK QICRQTGAKL SIREHETDPN LRNIELEGTF EQIKEASNMV KDLLLTVSMS  240
APPKSTHGVP GAPAPPGSNF KTKLCENFAK GSCTFGDRCH FAHGAAELRK QGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027937449.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-108C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3V8L80.0A0A1S3V8L8_VIGRR; zinc finger CCCH domain-containing protein 14
STRINGGLYMA02G29360.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-63C3H family protein