PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002672

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 291aa MW: 31889.8 Da PI: 8.8173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45791870	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-21550	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Vun002672 36 WKCEKCSKRYAVQSDWKAHSKIC 58 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.7E-5	24	57	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.77E-5	31	80	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
YVCPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 60 REYKCDCGTL FSRRDSFITH RAFCDALAQE SGRAVNPHSL LSSQSQFRSH GLQLEAPPSS 120 SSSLVMKREQ DLNLLGQEIP SWLSSPTVLE QSLRTTLDFS TPHHSLFHHD QNPNPITTTT 180 TSSSSSTTTP SFLPSFSSFH YSTTSPHMSA TALLQKASQI GVTVSAAAAS QAMIVRPHLF 240 LQQVHVPQCT TTTTTTTTTT GYNNMASSSP VSGMLMAIPS REQIGTHGFA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	32	93	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-36	32	93	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027940348.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Refseq	XP_027940349.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Refseq	XP_027940350.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Refseq	XP_027940351.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Refseq	XP_027940352.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9SCQ6	1e-63	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0L9V1W4	1e-170	A0A0L9V1W4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RPJ9	1e-170	A0A0S3RPJ9_PHAAN; Uncharacterized protein
STRING	XP_007161022.1	1e-163	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-62	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]