PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002685

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 291aa MW: 32441.6 Da PI: 8.4822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45826136	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-5318	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	196	213	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C+ C+ksF+r nL+ H+ Vun002685 196 CSVCSKSFNRYNNLQMHM 213 *****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.6E-6	187	216	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-5	194	213	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.699	194	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.1E-4	274	289	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
XIRKTICAFT MTDPHSNLYA GTFNFMPLYS HRSSFTSQPN HFSSYPPLSY SNITNTFSNI 60 LQSETSSSSC AAPPSPPLRE ALPLISLIKQ KENEPSNAAG NELAEEEGHK KRDMDETLLT 120 EDADDETVEV ALHIGLPSVD SSDLLGSEKI SSACAQMGGK REVSVVSGHP LDRLNKVQYW 180 IPTPSQILIG PTQFLCSVCS KSFNRYNNLQ MHMWGHGSQY RKGPDSLKGT QPSAMLRLPC 240 FCCAPGCKHN IEHPRARPLK DFRTLQTHYK RKHGIKPYMC RKCDKTFAVK G

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027918469.1	0.0	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-80	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A4D6M478	0.0	A0A4D6M478_VIGUN; Uncharacterized protein
STRING	XP_007148861.1	1e-169	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	2e-75	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]