PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002785
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 286aa    MW: 31712.1 Da    PI: 10.072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45829657PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-24595PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-124387147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        Vun002785 43 RENWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 87
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-163793IPR009057Homeodomain-like
PROSITE profilePS5129414.1433892IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-64193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-184190IPR006447Myb domain, plants
SMARTSM007174.8E-104290IPR001005SANT/Myb domain
PfamPF002493.5E-104387IPR001005SANT/Myb domain
CDDcd001677.39E-84588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALPGMPPFA SVSAAAAAAV SASNSSEDAA KKIRKPYTIT KSRENWTEPE HDKFLEALQL  60
FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKSGASEHL PPPRPKRKAA HPYPQKASRN  120
APVLPQVSGS FQSSSALLEP GYILKNDSPA MLKIPMNTVV SSWSNNTLQT VNLSPVTKVN  180
NPCSSGESTP KVRPAGESNG QTPHQGNKIH PLRVLPDFTQ VYGFIGSVFD PNATEHLQKL  240
KKMDRIDVET VLLLMRNLSI NLTSPDFEDH RKLLSSYEVE PERNNY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027923153.10.0protein REVEILLE 6-like
SwissprotQ8H0W31e-117RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0S3TB510.0A0A0S3TB51_PHAAN; Uncharacterized protein
STRINGGLYMA16G29740.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-101MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]