PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002793
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 286aa    MW: 31545.9 Da    PI: 6.3507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45799123PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-34794PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000342232611255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vun002793 223 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 261
                6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.236211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-10221274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-6221265No hitNo description
Gene3DG3DSA:4.10.280.104.6E-7221268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
XDWNNIFLFS SVEIVETKKG MNRGVLQSSP VQQMMAGNPN NWWNITTTPP PPPPPSQPSS  60
PFFSAPSNFL TPYNTSPSLP LPSWHDNNQD LPESWSQLLM SGMVSEEEKG AMCQVQQQML  120
NQASRASIVD VKQEGSVNSY VYGHGNEEFH PAKPTWPQIV PASSPKSCVT SFSSSMLDFS  180
NNNTDARPLP PDPSSECNST AAGGAFKKAR VQPPTTQSTF KVRKEKLGDR ITALHQLVSP  240
FGKTDTASVL LEAIGYIRFL QSQIEPLAYH TWVMDQNMSS TICSRX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027915416.11e-179transcription factor bHLH68-like isoform X1
SwissprotQ8S3D12e-47BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A4D6L9S41e-163A0A4D6L9S4_VIGUN; Solute carrier family 15
STRINGGLYMA05G35610.11e-142(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]