PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002823
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 284aa    MW: 32416.6 Da    PI: 8.8049
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45824767PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-11937PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19213246134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs+C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Vun002823 213 CSHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 246
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.675207243IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-17207257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-14211269No hitNo description
Gene3DG3DSA:3.30.50.108.3E-15211244IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.50E-17212259No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003201.8E-17213246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKDWLFFDKN FNGLSNDILD DVMDIELFDF PLEDVETDDG AEQDWNAHFK FLEEPSLGIF  60
PVQPSQHCAH TQNENVKVER GFSVSTAKKA GPTYNKNVPI QKDLHQFQSN SPVSVFESSS  120
SSSCVENSNL ELPVIPTKRP RSKRRPLSNI TLLYSIPFIF TSPAFQKSDF ETHPFEKFSN  180
VVRKQRKKNI PMVGNKTEMK RSSSEEFVAV RKCSHCEVTK TPQWREGPMG PKTLCNACGV  240
RYRSGRLFAE YRPAASPTFV ASLHSNSHKK VLEIRNRDTH VTVR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909262.10.0GATA transcription factor 11-like
RefseqXP_027909263.10.0GATA transcription factor 11-like
RefseqXP_027909264.10.0GATA transcription factor 11-like
RefseqXP_027909265.10.0GATA transcription factor 11-like
TrEMBLA0A4D6LIQ60.0A0A4D6LIQ6_VIGUN; Uncharacterized protein
STRINGXP_007132266.11e-153(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-47GATA transcription factor 11