PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002848
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31444.1 Da    PI: 10.3204
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45805988PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-22177PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3521.3e-10712831301
  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllven 89 
                md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + ls++++a+++rd         m++  rd+++++       +++k+++++++++
  Vun002848   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSGTNGAFHHRDigmshatypMDY-VRDAWISS-------QRDKYMNMIPTNH 91 
                888888888*************************988766355555.9**********************9.99****99.......889*******999 PP

  GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                +        ++ +++t+s++++q+     + ++  + +ee+++e++p++e    + +  ++kkrq++k+pk++kakk k+ ++++k+++++    +r++ 
  Vun002848  92 N--------YGGIPETSSAHQIQM-----IPPPELP-KEEREVEEEPVVE----KVTGGTRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTV--HRARV 171
                7........99***********99.....4444444.3333345555444....455667778899**************9999987777777..69*** PP

  GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289
                +kk++++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL+++W
  Vun002848 172 PKKTTEIVINGIDMDISSIPIPVCSCTGASQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYW 271
                **************************************************************************************************** PP

  GAGA_bind 290 AkHGtnkfvtir 301
                AkHGtnkfvtir
  Vun002848 272 AKHGTNKFVTIR 283
                ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.5E-1121283IPR010409GAGA-binding transcriptional activator
SMARTSM012263.8E-1641283IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLSGT NGAFHHRDIG  60
MSHATYPMDY VRDAWISSQR DKYMNMIPTN HNYGGIPETS SAHQIQMIPP PELPKEEREV  120
EEEPVVEKVT GGTRKKRQSP KVPKSPKAKK SKRGPRVPKN ENAPTVHRAR VPKKTTEIVI  180
NGIDMDISSI PIPVCSCTGA SQQCYRWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGR  240
KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922514.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_027922515.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD05e-94BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A4D6LV960.0A0A4D6LV96_VIGUN; GAGA-binding transcriptional activator
STRINGXP_007152627.10.0(Phaseolus vulgaris)
STRINGXP_007152630.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.35e-89basic pentacysteine 2