PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002925

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

BBR-BPC

Protein Properties

Length: 279aa MW: 31334.1 Da PI: 10.0168

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45823657	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-1435362	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	310.6	5.2e-95	1	279	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96 mddd + n+gyyep +lglqlm +++rd+k+ r+ + l++ ++++++rd + + l+ ++ + ++++++++++ +n Vun002925 1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTDRDTKPylpaRDPAV-LMGANGTFHPRDCVVSEAPMQLNYVRDNWTSQRDRYFSMQQPTN------- 90 899988779****98..4579************999888888.9*******55555555555533333444667777777554....... PP GAGA_bind 97 vgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksid 195 +++ vl++t+ + +lq ++++ + ++ + +e+l ++++ ++k++++k ++pk+kk +k+k+ + + + +r+k +kk+++ Vun002925 91 PNYAVLPETSVAPNLQI-----IQPPDTSrDEKVDRIEELVVKKEGGQSKKRQTK---GALTTPKAKKPRKPKD-------NGNVPV--QRVKPPKKTME 173 46899***99999.....333333312333444444444433333333322...3556666666666666.......455666..6899*** PP GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtn 295 lv+ng+++D+s+lP+PvCsCtG+++qCY+W +GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy+++np+DLk+hWA+HGtn Vun002925 174 LVINGIDMDISGLPIPVCSCTGSPQQCYRWVCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTN 273 ************************************************************************************************ PP GAGA_bind 296 kfvtir 301 kfvtir Vun002925 274 KFVTIR 279 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.2E-104	1	279	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.8E-152	1	279	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGM TDRDTKPYLP ARDPAVLMGA NGTFHPRDCV 60 VSEAPMQLNY VRDNWTSQRD RYFSMQQPTN PNYAVLPETS VAPNLQIIQP PDTSRDEKVD 120 RIEELVVKKE GGQSKKRQTK GALTTPKAKK PRKPKDNGNV PVQRVKPPKK TMELVINGID 180 MDISGLPIPV CSCTGSPQQC YRWVCGGWQS ACCTTNVSIY PLPMSMKRRG ARIAGRKMSQ 240 GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014505856.2	0.0	protein BASIC PENTACYSTEINE2 isoform X1
Refseq	XP_027920947.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_027920949.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_027920950.1	0.0	protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-103	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A4D6L5E5	0.0	A0A4D6L5E5_VIGUN; GAGA-binding transcriptional activator
STRING	XP_007158817.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-105	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]