PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002967
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 278aa    MW: 31197 Da    PI: 8.9045
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45821378PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-31941PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-19146179134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Vun002967 146 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 179
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.3E-20140191IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13141181No hitNo description
PROSITE profilePS5011412.809144176IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-16144179IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.19E-14145182No hitNo description
PfamPF003204.4E-17146179IPR000679Zinc finger, GATA-type
PROSITE patternPS003440146171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTSVSLNLPD QTELFISPDN HHSTLSCYSF FDILDQSQTK DIRYLTHADQ EDVKFVFHGG  60
SSDNEQVCNA SSTQPKSVMA DPNSSACSRH NLSFHKIEDP EKRRGNYGYE KWLSSNVRLT  120
RKMMSPPSSN NSDLATNKAF DIIRVCADCN TTSTPLWRSG PNGPKSLCNA CGIRQRKARR  180
AMAEAANGFG PSRGHHEKEK KCRRKHFAGL KNKSKTATSA TGRGTLSEEQ KLRIDLKDFA  240
ISLRDDSALK QEFPMDEVSQ AAMLLMDLSR EALFTYYK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904902.10.0putative GATA transcription factor 22
TrEMBLA0A1S3U3N71e-146A0A1S3U3N7_VIGRR; putative GATA transcription factor 22 isoform X1
TrEMBLA0A4D6NTU91e-147A0A4D6NTU9_VIGUN; Uncharacterized protein
STRINGXP_007136825.11e-115(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-21GATA transcription factor 16