PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002979
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31204.9 Da    PI: 7.5475
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45811354PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-17976PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.2e-264592451
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               enk+nrqvt+skRr g++KKA E+SvLCda+va+i+fs++gkl eys+
  Vun002979 45 ENKINRQVTLSKRRSGLIKKAREISVLCDADVALIVFSTKGKLLEYSN 92
               9*********************************************95 PP
2K-box92.38.2e-311112074100
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ++    ++a +e++  e++kLk+++e Lq  qR+++GedL+sL+l+ Lq+LeqqL+++l++iR +Kn+ ++e+i+ lqkk k+l+e+n+ L kk++e
  Vun002979 111 RQEGGSDQAPNENWAIEHEKLKARVEVLQLHQRNFMGEDLDSLNLRGLQSLEQQLDSALRHIRLRKNQAMHESISGLQKKDKALRERNNVLAKKIKE 207
                55555778889***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-253493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.4133494IPR002100Transcription factor, MADS-box
CDDcd002653.88E-3235112No hitNo description
SuperFamilySSF554551.09E-2635124IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-233656IPR002100Transcription factor, MADS-box
PfamPF003193.1E-214590IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-235671IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-237192IPR002100Transcription factor, MADS-box
PfamPF014866.2E-26118205IPR002487Transcription factor, K-box
PROSITE profilePS5129715.423121211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
GCTSSFLCFA SPSHVLPPPI EIGSSEVIEE RRFNGKGKSG VEEDENKINR QVTLSKRRSG  60
LIKKAREISV LCDADVALIV FSTKGKLLEY SNQPSVERII DRYERHSYAE RQEGGSDQAP  120
NENWAIEHEK LKARVEVLQL HQRNFMGEDL DSLNLRGLQS LEQQLDSALR HIRLRKNQAM  180
HESISGLQKK DKALRERNNV LAKKIKEKEK ALVPQEQEAL LNNGDVTSVM VTKPLESLNI  240
GCRGSPEAKY DEGTPTSTQP KTVIPPWMMT LPTDEXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-1212720723103Developmental protein SEPALLATA 3
4ox0_B2e-1212720723103Developmental protein SEPALLATA 3
4ox0_C2e-1212720723103Developmental protein SEPALLATA 3
4ox0_D2e-1212720723103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922085.11e-160truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ412746e-83AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A0S3R7I41e-139A0A0S3R7I4_PHAAN; Uncharacterized protein
STRINGGLYMA17G08890.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-78AGAMOUS-like 8
Publications ? help Back to Top
  1. Menzel G,Apel K,Melzer S
    Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering.
    Plant J., 1996. 9(3): p. 399-408
    [PMID:8919916]