PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun003194

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 268aa MW: 29448.6 Da PI: 7.6703

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45910781	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-14058	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.5e-13	31	54	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++CkF+H+ Vun003194 31 EKECHYYMRTGSCKFGANCKFNHP 54 679********************9 PP
2	zf-CCCH	30.4	6.6e-10	164	190	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Vun003194 164 PGEPECSYFLKTGDCKFKSNCKFHHPK 190 5799*********************96 PP
3	zf-CCCH	36.5	7.9e-12	212	236	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G+ CkF H+p Vun003194 212 QNVCTYYSRYGICKFGPACKFDHPP 236 568********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.263	28	56	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-7	28	55	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-5	30	55	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-10	31	54	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-5	34	53	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.061	163	191	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	163	190	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-7	165	190	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-6	168	192	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	207	234	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.488	209	237	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-5	209	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-9	212	236	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-4	214	234	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
XCKFNHTRGK SSSASPFGEL NFLGLPIRVG EKECHYYMRT GSCKFGANCK FNHPDPTAGG 60 GDSPSRYGNG SSVSLQGVSQ SSISSWSSTR PLNESTPFVP MILSPNPGVS PQSSEWDGYQ 120 APVYLPERNM HLPSTYVMNN PVMETNVYMN HQKQVQVEEF PERPGEPECS YFLKTGDCKF 180 KSNCKFHHPK NRIARLPPCS LSDKGLPLRP DQNVCTYYSR YGICKFGPAC KFDHPPPSTM 240 SGLDQQSSHT DSASVDVAED GGVSVGNQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027904413.1	0.0	zinc finger CCCH domain-containing protein 43-like
Swissprot	Q9STM4	4e-99	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A4D6NPM1	0.0	A0A4D6NPM1_VIGUN; Vesicle-associated membrane protein 7
STRING	XP_007137964.1	1e-176	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-94	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]