PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun003263

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CPP

Protein Properties

Length: 265aa MW: 28543.3 Da PI: 8.4391

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45955528	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-8701	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	52.2	1.2e-16	60	98	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN Vun003263 60 RHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNA 98 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	27.93	1	100	IPR005172	CRC domain
SMART	SM01114	6.6E-17	60	101	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.5E-12	62	98	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
IEPCSCQDCF NKPVHEDTVL QTRKQIESRN PLAFAPKVIR SADSVPEIGD DPNKTPASAR 60 HKRGCNCKKS SCLKKYCECY QGGVGCSIGC RCEGCKNAFG RKDGSAPVGI ETEQEETEAS 120 DKGVAEKASQ KTEIQNTEEH LDSATVSTPL RLSRPLLPLP FSSKGKAPRS FVTTISGSAL 180 FGSQKLGKPN SLWPQSKHFQ TVPDDEMPEI LLGDTSPVTC IKTSSPNGKR ISSPSCDLGS 240 SPSRRGGRKL ILQSIPSFPS LTPHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-12	15	97	49	120	Protein lin-54 homolog
5fd3_B	3e-12	15	97	49	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027915005.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	1e-91	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A4D6LTQ3	0.0	A0A4D6LTQ3_VIGUN; Lin-54 family
STRING	XP_007157112.1	1e-175	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	6e-84	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]