PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003299
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 263aa    MW: 30051.2 Da    PI: 9.6071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45824462PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-3119PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.44e-14132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        Vun003299 132 PWTKEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 176
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6612276IPR017884SANT domain
SMARTSM007173.8E-72375IPR001005SANT/Myb domain
SuperFamilySSF466892.5E-112580IPR009057Homeodomain-like
CDDcd001671.77E-62672No hitNo description
Gene3DG3DSA:1.10.10.601.3E-12124184IPR009057Homeodomain-like
PROSITE profilePS5129420.236125181IPR017930Myb domain
SuperFamilySSF466897.9E-17126180IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-17128180IPR006447Myb domain, plants
SMARTSM007176.7E-13129179IPR001005SANT/Myb domain
CDDcd001677.77E-11132177No hitNo description
PfamPF002491.6E-12132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEILPPASPY MYNTNWLLDD NRTNTKWTPA ENKPFENALA VYDKDTPDRW HKVAEMIPGK  60
TVMDVVKQYK ELEADVCNIE AGLIPIPGYS TTTSPFTLDW VNTPGYDGFK GLTAKRSSSG  120
RPPEQERKKG VPWTKEEHKL FLLGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ  180
LSRGKDKRRA SIHDITTVNL TETTRTSSED SSKRSTSPQH SVMLSHQQQQ QQQQPISSAA  240
HQSDFHGVSX QMQEWHGSDL HMX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1727991183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437148.11e-167PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-109DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D6KWI11e-175A0A4D6KWI1_VIGUN; Protein MYSM1
STRINGXP_007146740.11e-160(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-88Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]